Package: motus 6.1.1

Birds Canada

motus: Fetch and use data from the Motus Wildlife Tracking System

Retrieve, filter, and visualize telemetry data from the Motus Wildlife Tracking System <https://motus.org>.

Authors:Birds Canada [aut, cre], John Brzustowski [aut], Denis Lepage [aut], Steffi LaZerte [ctb], Joey Bernard [ctb], Lucas Berrigan [ctb], Tara Crewe [ctb], Zoe Crysler [ctb], Jeremy Hussell [ctb], Catherine Jardine [ctb], Amie MacDonald [ctb], Stuart Mackenzie [ctb], Paul Morrill [ctb], Josh Sayers [ctb], Philip Taylor [ctb]

motus_6.1.1.tar.gz
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motus.pdf |motus.html✨
motus/json (API)
NEWS

# Install 'motus' in R:

install.packages('motus', repos = c('https://steffilazerte.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/motuswts/motus/issues

On CRAN:

bats birds insects science telemetry tracking

5.01 score 19 stars 108 scripts 40 exports 80 dependencies

Last updated 6 months agofrom:73fecbf7eb. Checks:OK: 1 NOTE: 3 ERROR: 3. Indexed: no.

Target	Result	Date
Doc / Vignettes	OK	Nov 01 2024
R-4.5-win	ERROR	Nov 01 2024
R-4.5-linux	NOTE	Nov 01 2024
R-4.4-win	ERROR	Nov 01 2024
R-4.4-mac	NOTE	Nov 01 2024
R-4.3-win	ERROR	Nov 01 2024
R-4.3-mac	NOTE	Nov 01 2024

Exports:%>%activity activityAll checkVersion clarify createRunsFilter deleteRunsFilter deprecateBatches filterByActivity getAccess getGPS getMotusDBSrc getRuns getRunsFilters gpsAll listRunsFilters metadata motusLogout nodeData plotAllTagsCoord plotAllTagsSite plotDailySiteSum plotRouteMap plotSite plotSiteSig plotTagSig points2Path simSiteDet siteSum siteSumDaily siteTrans srvTimeout sunRiseSet tagme tagmeSample tagSum tagSumSite tellme timeToSunriset writeRunsFilter

Dependencies:abind askpass bit bit64 blob cachem class classInt cli colorspace cpp11 crayon curl data.table DBI dbplyr dplyr e1071 fansi farver fastmap generics geosphere ggplot2 ggspatial glue gridExtra gtable hms httr isoband jpeg jsonlite KernSmooth labeling lattice lifecycle lubridate lutz magrittr MASS Matrix memoise mgcv mime munsell nlme openssl pillar pkgconfig plogr png prettyunits progress proxy purrr R6 RColorBrewer Rcpp rlang rosm RSQLite s2 scales sf sp stringi stringr suncalc sys tibble tidyr tidyselect timechange units utf8 vctrs viridisLite withr wk

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Add/update batch activity	activity
Add/update all batch activity	activityAll
Check database version	checkVersion
Report or claim ambiguous tag detections	clarify
Create a new filter records that can be applied to runs	createRunsFilter
Delete a filter	deleteRunsFilter
Fetch and remove deprecated batches	deprecateBatches
Filter 'alltags' by 'activity'	filterByActivity
Return accessible projects and receivers	getAccess
Get GPS variables	getGPS
Get the src_sqlite for a receiver or tag database	getMotusDBSrc
Returns a dataframe containing runs	getRuns
Get runsFilters	getRunsFilters
Add/update all GPS points	gpsAll
Returns a dataframe of the filters stored in the local database.	listRunsFilters
Update all metadata	metadata
Fetch and use data from the Motus Wildlife Tracking System	motus
Forget login credentials for motus.	motusLogout
Add/update nodeData	nodeData
Plot all tag detections by latitude or longitude	plotAllTagsCoord
Plot all tag detections by deployment	plotAllTagsSite
Plots number of detections and tags, daily, for a specified site	plotDailySiteSum
Map of tag routes and sites coloured by id	plotRouteMap
Plot all tags by site	plotSite
Plot signal strength of all tags by a specified site	plotSiteSig
Plot signal strength of all detections for a specified tag by site	plotTagSig
Convert points to path	points2Path
Create a dataframe of simultaneous detections at multiple sites	simSiteDet
Summarize and plot detections of all tags by site	siteSum
Summarize daily detections of all tags by site	siteSumDaily
Summarize transitions between sites for each tag	siteTrans
Sets global options for timeouts	srvTimeout
Obtain sunrise and sunset times	sunRiseSet
Download motus tag detections to a database	tagme
Create an in-memory copy of sample tags data	tagmeSample
General summary of detections for each tag	tagSum
Summarize detections of all tags by site	tagSumSite
Report how much new data motus has for a tag detection database	tellme
Obtain time to and from sunrise/sunset	timeToSunriset
Write to the local database the probabilities associated with runs for a filter	writeRunsFilter